Extension of MCMCDiagnosticTools
The following methods of MCMCDiagnosticTools.jl are extended by this package.
MCMCDiagnosticTools.bfmi
MCMCDiagnosticTools.ess_rhat
MCMCDiagnosticTools.mcse
MCMCDiagnosticTools.rstar
MCMCDiagnosticTools.bfmi
— Methodbfmi(data::InferenceData) -> DimArray
bfmi(sample_stats::Dataset) -> DimArray
Calculate the chainwise estimated Bayesian fraction of missing information (BFMI).
See MCMCDiagnosticTools.bfmi
for more details.
MCMCDiagnosticTools.ess_rhat
— Methodess_rhat(data::InferenceData; kwargs...) -> Dataset
ess_rhat(data::Dataset; kwargs...) -> Dataset
Calculate the effective sample size (ESS) and $\widehat{R}$ diagnostic for each parameter in the data.
For more details and a description of the kwargs
, see MCMCDiagnosticTools.ess_rhat
.
MCMCDiagnosticTools.mcse
— Methodmcse(data::InferenceData; kwargs...) -> Dataset
mcse(data::Dataset; kwargs...) -> Dataset
Calculate the Monte Carlo standard error (MCSE) for each parameter in the data.
For more details and a description of the kwargs
, see MCMCDiagnosticTools.mcse
.
MCMCDiagnosticTools.rstar
— Methodrstar(
rng::Random.AbstractRNG=Random.default_rng(),
classifier,
data::Union{InferenceData,Dataset};
kwargs...,
)
Calculate the $R^*$ diagnostic for the data.
For a description of the classifier
and kwargs
, see MCMCDiagnosticTools.rstar
.